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David Lab FoodSeq Handbook

Pruning Taxa

Initializing search

Getting Started
Wet Lab Protocols
Creating a Phyloseq
Post-Phyloseq Processing and Analysis

David Lab FoodSeq Handbook

Getting Started
Getting Started
Wet Lab Protocols
Wet Lab Protocols
Creating a Phyloseq
Creating a Phyloseq
Post-Phyloseq Processing and Analysis
Post-Phyloseq Processing and Analysis

Pruning Taxa

To-do

Add instructions on pruning taxa that are at 0 reads after sample filtering.

May 14, 2026 May 14, 2026

Ashish Subramanian

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Filtering Samples

Agglomerating Taxa

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